Biology Textbook

Comments on Unit 4 in Towle’s Modern Biology*: Origin-of-Life and Evolution

Chapter 14: Origin-of-Life

The unit talks about the origin-of-life and biological evolution. The former is defined to be atoms to the first cell, while evolution is the first cell to humans. Chapter 14 puts a positive spin on the very disappointing results of origin-of-life experiments. In 1953 Stanley Miller successfully produced some amino acids in an experiment believed to simulate prebiotic conditions. Since then fifty years of experimentation have not added to that initial success in any meaningful way. All attempts to show how proteins, RNA and DNA arose in prebiotic conditions have failed.

The section on page 268 entitled “From Molecules to Cell-like Structures” is an attempt to convince students that cells are not that much more complex than inanimate materials and, therefore, it is reasonable for them to believe that they arose from nonliving matter. To demonstrate this consider the section’s use of the terms “protein molecules”, “enzymes” and “cell-like structures”.

First the use of “protein molecules”. The fact is that scientists have tried unsuccessfully for decades to determine how proteins came into existence. But the section claims that “protein molecules” “form spontaneously in the laboratory from solutions of simple organic chemicals”. That falsehood along with the one on the preceding page that claims scientists have made nucleotides are inexcusable. Proteins and nucleotides, the building blocks of RNA and DNA, are the most important molecules in cells. How could these errors escape the attention of the many contributors and reviewers listed in the front of the book?

Secondly the role of enzymes in catalyzing chemical reactions is misrepresented. The fact is that any chemical reaction that occurs with enzymes will also occur without them but they will occur more slowly. Likewise enzymes in cells do not cause or prohibit reactions but rather greatly increase the speed of reactions. Therefore, the claim that experiments have shown that “some important aspects of cellular life” can arise without enzymes is wrong in two ways. First experiments are not needed to demonstrate what is commonly known about enzymes. Secondly their claim that some enzymes in cells may not be needed is bogus because it misses the point that what enzymes do is speed up reactions. This misrepresentation begs the same question as the one appearing at the end of the previous paragraph. It would seem the purpose of this charade is to suggest that cells are not that special. Consider this sentence, “Thus, these studies suggest that the gap between the nonliving chemical compounds and cellular life may not be quite as wide as previously thought.”

Thirdly, the ambiguous term “cell-like structures” is used repeatedly and the implication is that the only thing they lack from being alive is hereditary material. In fact, the suggestion is made on page 270 that “The self replicating RNA would have provided the hereditary information that the cell-like structures lack.” The “cell-like structures” have some of the properties of cells but so do soap bubbles, balls of mercury and just about everything else. The bottom line is that in 50 years of origin-of-life experiments, scientists have not made anything remotely similar to a cell including proteins, nucleotides, RNA and DNA. They do not know how any cellular structure or cellular process came into existence. Students have the right to know that in unambiguous terms.

As to the experiments to make an RNA replicator (p. 270), students should be told the following. Decades-worth of experiments to make RNA under prebiotic conditions have not been successful. This includes all types of RNAs, not just ribozymes. Experimenters point out the many problems at the various stages of synthesizing RNA. RNA is made of nucleotides and each nucleotide consists of three parts: a five carbon sugar called a ribose, a nitrogen base and a phosphate. If all the ingredients of nucleotides are mixed together, nucleotides do not result. The conditions that are right to produce a particular part, such as ribose, are devastating to the production of the nitrogen bases. The temperature, Ph and water content must be adjusted for each part to synthesize. To get around this problem, experimenters make the parts separately and then bring them together, which would seem to violate the spirit of a prebiotic reaction. But even with a human element injected into the experiment, problems still abound. In the presence of water, nucleotides tend to dissemble rather than assemble. Not only will the nucleotides of cellular RNA form, but also many analogs that will interfere with the assembly of the RNA. The analogs result from the bonding of the base and the phosphate to different positions on the ribose. Also many sugars other than ribose would form and since they are chemically similar to ribose would form more nucleotide analogs. The presence of numerous analogs would greatly diminish the probability that a chain of nucleotides would form that was absent of analogs. And if the improbable does occur and a pure chain does result, the improbability is compounded by the likelihood that the RNA will not be a ribozyme. These and other problems have led one experienced experimenter in the origin-of-life field to refer to RNA as “the pre-biotic chemist’s nightmare”.

Suppose scientists succeed in showing how proteins, DNA and RNA evolved. How large is the next step to a cell? Here are two opinions by prominent scientists.

The biochemist David Green writes in his book Molecular Insights into the Living Process: “the macromolecule-to-cell transition is a jump of fantastic dimensions, which lies beyond the range of testable hypothesis. In this area all is conjecture. The available facts do not provide a basis for postulating that cells arose on this planet.”

Francis Crick, one of the discoverers of DNA, writes in his book Life Itself: “An honest man, armed with all the knowledge available to us now, could only state that in some sense, the origin of life appears at the moment to be almost a miracle.”


Chapters 15-18: Evolution

This material skirts the issue of how macro-changes occurred in organisms, such as the feathered wing, vertebrae, legs, amniotic reproduction system, invertebrates to vertebrates, single cell to multicell organisms, classes of vertebrates, namely, fish, birds, reptiles, mammals and amphibians, etc. It does not talk about a mechanism for macro-change or provide evidence that it has occurred. Still the tenor of the whole unit will leave little doubt in a student’s mind that evolution was the cause.

On the other hand, the unit devotes many pages to micro-changes, those changes that occur at the species-level that no one disputes. I refer to the material on Darwin in Chap. 15, and all of Chap. 16. Even Chap. 17 on human evolution talks about the differences between species of the same genus, small potatoes in comparison to the changes at the levels of phyla, classes, orders and families.


Cherry-picking in the fossil record

First Table 14-1 lists four isotopes used in radioactive dating, carbon and three more. The text explains that since carbon is found in living organisms, it can be used to date fossils. However, because of the relatively short half-life of carbon, it can only be used to date fossils that are less than 60,000 years old. It then explains that the other three isotopes are used to date older fossils because they have longer half-lives. Here is the cherry-picking part. Many, if not most, students will infer that these isotopes are, like carbon, found in fossils. Why aren’t students told that these isotopes are not found in fossils? Why aren’t they told that these isotopes are not even found in the sedimentary rocks that contain the fossils? Could it be to keep students from knowing that the radioactive dating of fossils is very indirect and, therefore, subject to error?

Another picking of cherries-- the distribution of fossils in the earth as explained on pages 280-281. Table 15-1 Geological History of Earth is very effective at giving the impression that it represents stacked horizontal layers of rock with humans and other “modern” vertebrates in the upper layers and “primitive” vertebrates and marine invertebrates in lower layers. Many students will be so impressed and, thereby, infer that this sequence of layers actually exists and, furthermore, exists in most places. The fact is that it is not found ANYWHERE on earth. Also it is not unusual for fossils that are thought to be millions of years older to be above younger fossils. There are many more things that are lacking but at the very least this minimum amount of information should be provided to students.

Finally the most egregious example of cherry-picking in the fossil record- -the absence of a discussion of transitional fossils. Transitional fossils constitute the most important aspect of the fossil record for determining if all organisms are connected by an evolutionary process. There would be no better evidence than numerous sequences of fossils showing slight changes accumulating to make big changes-- a sequence that starts with a fish and ends with a frog, a sequence that shows the gradual evolution of a feathered wing from a reptile scale. On the other hand the absence of transitional fossils is very damaging to evolution to the point of falsifying it. By comparison other aspects of the fossil record, such as the vertical distribution of fossils in the strata, and their geographical distribution have less evidentiary value. So why does the textbook discuss the latter but not the former?

Evolutionary Trees

These are found on pages 287, 343, 581, 672, 745, 800, 821, 841, 862, and 891. They imply that every point on them represents a species that existed in the past and we have their fossilized remains. Not so! Only the tips of the branches represent known species. They should be removed from the textbook.

*A. Towle, Modern Biology, (Austin, Texas: Holt, Rinehart and Winston, 1999)

 

 

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